HL7 PT FHIR Implementation Guide: Example IG Release 1 | STU1, published by HL7 Portugal. This guide is not an authorized publication; it is the continuous build for version 0.0.1 built by the FHIR (HL7® FHIR® Standard) CI Build. This version is based on the current content of https://github.com/hl7-pt/core/tree/master and changes regularly. See the Directory of published versions

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Resource Profile: PT_Specimen - Mappings

Active as of 2024-09-23

Mappings for the PTSpecimen resource profile.

Mappings for ()

PT_Specimen
Specimen
identifier
value	SPM-2.1.1
assigner
display	SPM-2.1.2
accessionIdentifier	SAC-1 or SAC-2
status	SPM-20
type	SPM-4, SPM-5 (Modifier)
coding
system	SPM-4.3, SPM-5.3
code	SPM-4.1, SPM-5.1
display	SPM-4.2, SPM-5.2
subject
reference	Patient/PID-3
receivedTime	SPM-18
parent
reference	Specimen/SPM-3
request
reference	ServiceRequest/ORC or OBR
collection
collected[x]	SPM-17
quantity	SPM-12
value	SPM-12.1
unit	SPM-12.2.2
system	SPM-12.2.3
code	SPM-12.2.1
method	SPM-7
coding
system	SPM-7.3
code	SPM-7.1
display	SPM-7.2
bodySite	SPM-8/10, SPM-9 (Modifier)
coding
system	SPM-8/10.3, SPM-9.3
code	SPM-8/10.1, SPM-9.1
display	SPM-8/10.2, SPM-9.2
container
identifier	SAC-3
value	SAC-3.1
assigner
display	SAC-3.2
type	SPM-27
coding
system	SPM-27.3
code	SPM-27.1
display	SPM-27.2
capacity
value	SAC-16 + SAC-17, SAC-21
unit	SAC-20.2
system	SAC-20.3
code	SAC-20.1
specimenQuantity
value	SAC-23
unit	SAC-24.2
system	SAC-24.3
code	SAC-24.1
additive[x]	SAC-27
condition	SPM-24
coding
system	SPM-24.3
code	SPM-24.1
display	SPM-24.2
note
text	OBX

Mappings for RIM Mapping (http://hl7.org/v3)

PT_Specimen
Specimen	Entity. Role, or Act, Role[classCode=SPEC]
text	Act.text?
contained	N/A
extension	N/A
modifierExtension	N/A
identifier	.id
id	n/a
extension	n/a
use	Role.code or implied by context
type	Role.code or implied by context
system	II.root or Role.id.root
value	II.extension or II.root if system indicates OID or GUID (Or Role.id.extension or root)
period	Role.effectiveTime or implied by context
assigner	II.assigningAuthorityName but note that this is an improper use by the definition of the field. Also Role.scoper
id	n/a
extension	n/a
reference	N/A
type	N/A
identifier	.identifier
display	N/A
accessionIdentifier	.participation[typeCode=SBJ].act[classCode=ACSN, moodCode=EVN].id
status	status
type	.code
id	n/a
extension	n/a
coding	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
text	./originalText[mediaType/code="text/plain"]/data
subject	.scoper or .scoper.playsRole
id	n/a
extension	n/a
reference	N/A
type	N/A
identifier	.identifier
display	N/A
receivedTime	.participation[typeCode=SBJ].act[code=SPCREC, moodCode=EVN].effectiveTime
parent	.scoper (if parent) .player.scopesRole[classCode=SPEC].player (if child)
id	n/a
extension	n/a
reference	N/A
type	N/A
identifier	.identifier
display	N/A
request	outboundRelationship[typeCode=FLFS].target
id	n/a
extension	n/a
reference	N/A
type	N/A
identifier	.identifier
display	N/A
collection	.participation[typeCode=SBJ].act[classCode=SPECCOLLECT, moodCode=EVN]
id	n/a
extension	n/a
modifierExtension	N/A
collector	.participation[typeCode=PFM].role
collected[x]	.effectiveTime
quantity	.participation[typeCode=SBJ].role[classCode=SPEC].player.quantity
id	n/a
extension	n/a
value	PQ.value, CO.value, MO.value, IVL.high or IVL.low depending on the value
unit	PQ.unit
system	CO.codeSystem, PQ.translation.codeSystem
code	PQ.code, MO.currency, PQ.translation.code
method	.methodCode
id	n/a
extension	n/a
coding	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
text	./originalText[mediaType/code="text/plain"]/data
bodySite	.targetSiteCode
id	n/a
extension	n/a
coding	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
text	./originalText[mediaType/code="text/plain"]/data
processing	.participation[typeCode=SBJ].act[code=SPCTRT, moodCode=EVN]
id	n/a
extension	n/a
modifierExtension	N/A
description	.text
procedure	.code
additive	.participation[typeCode=CSM].role[classCode=ADTV].code
time[x]	.effectiveTime
container	.player.scopingRole[classCode=CONT].scoper
id	n/a
extension	n/a
modifierExtension	N/A
identifier	.id
id	n/a
extension	n/a
use	Role.code or implied by context
type	Role.code or implied by context
system	II.root or Role.id.root
value	II.extension or II.root if system indicates OID or GUID (Or Role.id.extension or root)
period	Role.effectiveTime or implied by context
assigner	II.assigningAuthorityName but note that this is an improper use by the definition of the field. Also Role.scoper
id	n/a
extension	n/a
reference	N/A
type	N/A
identifier	.identifier
display	N/A
description	.desc
type	.code
id	n/a
extension	n/a
coding	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
text	./originalText[mediaType/code="text/plain"]/data
capacity	.quantity
id	n/a
extension	n/a
value	PQ.value, CO.value, MO.value, IVL.high or IVL.low depending on the value
unit	PQ.unit
system	CO.codeSystem, PQ.translation.codeSystem
code	PQ.code, MO.currency, PQ.translation.code
specimenQuantity	.playedRole[classCode=CONT].quantity
id	n/a
extension	n/a
value	PQ.value, CO.value, MO.value, IVL.high or IVL.low depending on the value
unit	PQ.unit
system	CO.codeSystem, PQ.translation.codeSystem
code	PQ.code, MO.currency, PQ.translation.code
additive[x]	.scopesRole[classCode=ADTV].player
condition
id	n/a
extension	n/a
coding	union(., ./translation)
id	n/a
extension	n/a
system	./codeSystem
version	./codeSystemVersion
code	./code
display	CV.displayName
userSelected	CD.codingRationale
text	./originalText[mediaType/code="text/plain"]/data
note	.inboundRelationship[typeCode=SUBJ].source[classCode=OBS, moodCode=EVN, code="annotation"].value
id	n/a
extension	n/a
author[x]	Act.participant[typeCode=AUT].role
time	Act.effectiveTime
text	Act.text

Mappings for FiveWs Pattern Mapping (http://hl7.org/fhir/fivews)

PT_Specimen
Specimen
identifier	FiveWs.identifier
accessionIdentifier	FiveWs.identifier
status	FiveWs.status
type	FiveWs.what[x]
subject	FiveWs.subject[x], FiveWs.subject
receivedTime	FiveWs.done[x]
request	FiveWs.why[x]
collection
collector	FiveWs.actor
collected[x]	FiveWs.init
duration	FiveWs.init

Mappings for HL7 v2 Mapping (http://hl7.org/v2)

PT_Specimen
Specimen
identifier	SPM-2
use	N/A
type	CX.5
system	CX.4 / EI-2-4
value	CX.1 / EI.1
period	CX.7 + CX.8
assigner	CX.4 / (CX.4,CX.9,CX.10)
accessionIdentifier	SPM-30 (v2.7+)
status	SPM-20
type	SPM-4 and possibly SPM-5
coding	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
text	C*E.9. But note many systems use C*E.2 for this
receivedTime	SPM-18
request	ORC? OBR-2/3?
collection	SPM-14
collector	PRT
collected[x]	SPM-17
quantity	SPM-12
value	SN.2 / CQ - N/A
unit	(see OBX.6 etc.) / CQ.2
system	(see OBX.6 etc.) / CQ.2
code	(see OBX.6 etc.) / CQ.2
method	SPM-7
coding	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
text	C*E.9. But note many systems use C*E.2 for this
bodySite	SPM-8 and SPM-9
coding	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
text	C*E.9. But note many systems use C*E.2 for this
fastingStatus[x]	OBR-
processing
additive	SPM-6
container
identifier	SAC-3
use	N/A
type	CX.5
system	CX.4 / EI-2-4
value	CX.1 / EI.1
period	CX.7 + CX.8
assigner	CX.4 / (CX.4,CX.9,CX.10)
type	SPM-27
coding	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
text	C*E.9. But note many systems use C*E.2 for this
capacity	one of: SAC 16, SAC17 and SAC 20, or SAC 21 and SAC 20
value	SN.2 / CQ - N/A
unit	(see OBX.6 etc.) / CQ.2
system	(see OBX.6 etc.) / CQ.2
code	(see OBX.6 etc.) / CQ.2
specimenQuantity	SAC-23 (value) SAC-24 (units
value	SN.2 / CQ - N/A
unit	(see OBX.6 etc.) / CQ.2
system	(see OBX.6 etc.) / CQ.2
code	(see OBX.6 etc.) / CQ.2
additive[x]	SAC-27
condition	SPM-24
coding	C*E.1-8, C*E.10-22
system	C*E.3
version	C*E.7
code	C*E.1
display	C*E.2 - but note this is not well followed
userSelected	Sometimes implied by being first
text	C*E.9. But note many systems use C*E.2 for this
note	OBX
author[x]	N/A
time	N/A
text	N/A